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1 Archilla, Juan F. R Nonlinear Systems, Vol. 2 I10005 2018 eBook  
2 Shmueli, Erez 3rd International Winter School and Conference on Network Science I09354 2017 eBook  
3 Brugge, Doug Incident on Simpac III I09286 2018 eBook  
4 Kamberaj, Hiqmet Molecular Dynamics Simulations in Statistical Physics: Theory and Applications I09009 2020 eBook  
5 Adamatzky, Andrew Unconventional Computing I08946 2018 eBook  
6 Kr??mer, Reinhard Membrane Transport Mechanism I07955 2014 eBook  
7 Uden, Lorna The 3rd International Workshop on Intelligent Data Analysis and Management I07089 2013 eBook  
8 Dokholyan, Nikolay V Computational Modeling of Biological Systems I06185 2012 eBook  
9 Lever, Greg Large-Scale Quantum-Mechanical Enzymology I06175 2015 eBook  
10 Radmaneshfar, Elahe Mathematical Modelling of the Cell Cycle Stress Response I05872 2014 eBook  
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TitleNonlinear Systems, Vol. 2 : Nonlinear Phenomena in Biology, Optics and Condensed Matter
Author(s)Archilla, Juan F. R;Palmero, Faustino;Lemos, M. Carmen;S??nchez-Rey, Bernardo;Casado-Pascual, Jes??s
PublicationCham, 1. Imprint: Springer 2. Springer International Publishing, 2018.
DescriptionXIX, 340 p. 144 illus., 95 illus. in color : online resource
Abstract NoteThis book presents an overview of the most recent advances in nonlinear science. It provides a unified view of nonlinear properties in many different systems and highlights many?? new developments. While volume 1 concentrates on mathematical theory and computational techniques and challenges, which are essential for the study of nonlinear science, this second volume deals with nonlinear excitations in several fields. These excitations can be localized and transport energy and matter in the form of breathers, solitons, kinks or quodons with very different characteristics, which are discussed in the book. They can also transport electric charge, in which case they are known as polarobreathers or solectrons. Nonlinear excitations can influence function and structure in biology, as for example, protein folding. In crystals and other condensed matter, they can modify transport properties, reaction kinetics and interact with defects. There are also engineering applications in electric lattices, Josephson junction arrays, waveguide arrays, photonic crystals and optical fibers. Nonlinear excitations are inherent to Bose-Einstein Condensates, constituting an excellent benchmark for testing their properties and providing a pathway for future discoveries in fundamental physics.??
ISBN,Price9783319722184
Keyword(s)1. Applications of Nonlinear Dynamics and Chaos Theory 2. BIOINFORMATICS 3. BIOMATHEMATICS 4. Computational Biology/Bioinformatics 5. CONDENSED MATTER 6. CONDENSED MATTER PHYSICS 7. EBOOK 8. EBOOK - SPRINGER 9. Mathematical and Computational Biology 10. MICROWAVES 11. Microwaves, RF and Optical Engineering 12. OPTICAL ENGINEERING 13. STATISTICAL PHYSICS
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Title3rd International Winter School and Conference on Network Science : NetSci-X 2017
Author(s)Shmueli, Erez;Barzel, Baruch;Puzis, Rami
PublicationCham, 1. Imprint: Springer 2. Springer International Publishing, 2017.
DescriptionVI, 130 p. 32 illus., 17 illus. in color : online resource
Abstract NoteThis book contains original research chapters related to the interdisciplinary field of complex networks spanning biological and environmental networks, social, technological, and economic networks. Many natural phenomena can be modeled as networks where nodes are the primitive compounds and links represent their interactions, similarities, or distances of sorts. Complex networks have an enormous impact on research in various fields like biology, social sciences, engineering, and cyber-security to name a few. The topology of a network often encompasses important information on the functionality and dynamics of the system or the phenomenon it represents. Network science is an emerging interdisciplinary discipline that provides tools and insights to researchers in a variety of domains. NetSci-X is the central winter conference within the field and brings together leading researchers and innovators to connect, meet, and establish interdisciplinary channels for collaboration. It is the largest and best known event in the area of network science. This text demonstrates how ideas formulated by authors with different backgrounds are transformed into models, methods, and algorithms that are used to study complex systems across different domains and will appeal to researchers and students within in the field.
ISBN,Price9783319554716
Keyword(s)1. Applications of Graph Theory and Complex Networks 2. BIOINFORMATICS 3. Computational Biology/Bioinformatics 4. Computational Social Sciences 5. COMPUTER SIMULATION 6. Data-driven Science, Modeling and Theory Building 7. EBOOK 8. EBOOK - SPRINGER 9. ECONOPHYSICS 10. PHYSICS 11. Simulation and Modeling 12. Social sciences???Computer programs 13. Social sciences???Data processing 14. Sociophysics
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TitleIncident on Simpac III : A Scientific Novel
Author(s)Brugge, Doug
PublicationCham, 1. Imprint: Springer 2. Springer International Publishing, 2018.
DescriptionIX, 234 p : online resource
Abstract NoteA few hundred years into the future, a wave of space colonization follows a disastrous earlier attempt to inhabit nearby extrasolar planets. It is guided by a new computational method based on massive data-driven socio-cultural and socio-epidemiological modeling and using novel biological computers, fed with data on Earth???s history of successes and failures. Yet, in the newly settled Simpac system, some unexpected and worrying anomalies begin cropping up, making an urgent expedition to the system necessary: is it the underlying data, the computations, or is some unknown entity tampering with the space colonization program? A race against time ensues as the lives of four strangers begin to converge. While grounded in the social systems aspect, the author posits that the future is likely to be characterized by more biology-based tools than most contemporary science fiction ??? which most often relies entirely on non-biological hardware in terms of advanced technologies ??? predicts. The result is an entertaining and skillful blend of thriller and SF, complemented by a nontechnical appendix describing the underlying science. About the Author: Doug Brugge holds a PhD in Biology from Harvard University and an MS in Industrial Hygiene from the Harvard School of Public Health. He is currently a Professor at the Department of Public Health and Community Medicine at Tufts University School of Medicine. He has secondary appointments in Civil and Environmental Engineering and at the Jonathan M. Tisch College of Active Citizenship and Public Service. Most of his work employs a community-based participatory research approach with a deep commitment to translating research into concrete policies and practices. He is the author of Particles in the Air: The Deadliest Pollutant is One You Breathe Every Day (Springer 2018). ???A taut, brilliantly crafted thriller! Brugge reminds us that the fabric of every society contains the pull threads for its unraveling.??? ???Len Boswell, author, A Grave Misunderstanding
ISBN,Price9783319931609
Keyword(s)1. ASTRONOMY 2. Behavioral economics 3. Behavioral/Experimental Economics 4. BIOINFORMATICS 5. Computational Biology/Bioinformatics 6. Computational Social Sciences 7. EBOOK 8. EBOOK - SPRINGER 9. Popular Science in Astronomy 10. Popular Social Sciences 11. SOCIAL SCIENCES 12. Social sciences???Computer programs 13. Social sciences???Data processing 14. SPACE SCIENCES 15. Space Sciences (including Extraterrestrial Physics, Space Exploration and Astronautics)
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TitleMolecular Dynamics Simulations in Statistical Physics: Theory and Applications
Author(s)Kamberaj, Hiqmet
PublicationCham, 1. Imprint: Springer 2. Springer International Publishing, 2020.
DescriptionXV, 463 p. 65 illus., 21 illus. in color : online resource
Abstract NoteThis book presents computer simulations using molecular dynamics techniques in statistical physics, with a focus on macromolecular systems. The numerical methods are introduced in the form of computer algorithms and can be implemented in computers using any desired computer programming language, such as Fortran 90, C/C++, and others. The book also explains how some of these numerical methods and their algorithms can be implemented in the existing computer programming software of macromolecular systems, such as the CHARMM program. In addition, it examines a number of advanced concepts of computer simulation techniques used in statistical physics as well as biological and physical systems. Discussing the molecular dynamics approach in detail to enhance readers understanding of the use of this method in statistical physics problems, it also describes the equations of motion in various statistical ensembles to mimic real-world experimental conditions. Intended for graduate students and research scientists working in the field of theoretical and computational biophysics, physics and chemistry, the book can also be used by postgraduate students of other disciplines, such as applied mathematics, computer sciences, and bioinformatics. Further, offering insights into fundamental theory, it as a valuable resource for expert practitioners and programmers and those new to the field.
ISBN,Price9783030357023
Keyword(s)1. Atomic structure???? 2. Atomic/Molecular Structure and Spectra 3. BIOINFORMATICS 4. Characterization and Evaluation of Materials 5. Chemistry, Physical and theoretical 6. Computational Biology/Bioinformatics 7. EBOOK 8. EBOOK - SPRINGER 9. MATERIALS SCIENCE 10. Molecular structure?? 11. Numerical and Computational Physics, Simulation 12. PHYSICAL CHEMISTRY 13. PHYSICS 14. Theoretical and Computational Chemistry
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TitleUnconventional Computing : A Volume in the Encyclopedia of Complexity and Systems Science, Second Edition
Author(s)Adamatzky, Andrew
PublicationNew York, NY, 1. Imprint: Springer 2. Springer US, 2018.
Description363 illus., 112 illus. in color. eReference : online resource
Abstract NoteThis volume of the Encyclopedia of Complexity and Systems Science, Second Edition, is a unique collection of concise overviews of state-of-art, theoretical and experimental findings, prepared by the world leaders in unconventional computing. Topics covered include bacterial computing, artificial chemistry, amorphous computing, computing with Solitons, evolution in materio, immune computing, mechanical computing, molecular automata, membrane computing, bio-inspired metaheuristics, reversible computing, sound and music computing, enzyme-based computing, structural machines, reservoir computing, infinity computing, biomolecular data structures, slime mold computing, nanocomputers, analog computers, DNA computing, novel hardware, thermodynamics of computation, and quantum and optical computing. Topics added to the second edition include: social algorithms, unconventional computational problems, enzyme-based computing, inductive Turing machines, reservoir computing, Grossone Infinity computing, slime mould computing, biomolecular data structures, parallelization of bio-inspired unconventional computing, and photonic computing. Unconventional computing is a cross-breed of computer science, physics, mathematics, chemistry, electronic engineering, biology, materials science and nanotechnology. The aims are to uncover and exploit principles and mechanisms of information processing in, and functional properties of, physical, chemical and living systems, with the goal to develop efficient algorithms, design optimal architectures and manufacture working prototypes of future and emergent computing devices
ISBN,Price9781493968831
Keyword(s)1. ARTIFICIAL INTELLIGENCE 2. BIOINFORMATICS 3. Chemistry, Physical and theoretical 4. COMPLEX SYSTEMS 5. Computational Biology/Bioinformatics 6. Computational Intelligence 7. DYNAMICAL SYSTEMS 8. EBOOK 9. EBOOK - SPRINGER 10. QUANTUM COMPUTERS 11. Quantum computing 12. STATISTICAL PHYSICS 13. Theoretical and Computational Chemistry
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TitleMembrane Transport Mechanism : 3D Structure and Beyond
Author(s)Kr??mer, Reinhard;Ziegler, Christine
PublicationBerlin, Heidelberg, 1. Imprint: Springer 2. Springer Berlin Heidelberg, 2014.
DescriptionXII, 272 p. 65 illus., 56 illus. in color : online resource
Abstract NoteThis book provides a molecular view of membrane transport by means of numerous biochemical and biophysical techniques. The rapidly growing number of atomic structures of transporters in different conformations and the constant progress in bioinformatics have recently added deeper insights. ?? The unifying mechanism of energized solute transport across membranes is assumed to consist of the conformational cycling of a carrier protein to provide access to substrate binding sites from either side of a cellular membrane. Due to the central role of active membrane transport there is considerable interest in deciphering the principles of one of the most fundamental processes in nature: the alternating access mechanism. ?? This book brings together particularly significant structure-function studies on a variety of carrier systems from different transporter families: Glutamate symporters, LeuT-like fold transporters, MFS transporters and SMR (RND) exporters, as well as ABC-type importers. ?? The selected examples impressively demonstrate how the combination of functional analysis, crystallography, investigation of dynamics and computational studies has made it possible to create a conclusive picture, or, more precisely, ???a molecular movie???. Although we are still far from a complete molecular description of the alternating access mechanism, remarkable progress has been made from static snapshots towards membrane transport dynamics
ISBN,Price9783642538391
Keyword(s)1. BIOINFORMATICS 2. Biological and Medical Physics, Biophysics 3. BIOLOGICAL PHYSICS 4. BIOPHYSICS 5. Cell membranes?? 6. Computational Biology/Bioinformatics 7. CRYSTALLOGRAPHY 8. Crystallography and Scattering Methods 9. EBOOK 10. EBOOK - SPRINGER 11. Membrane Biology 12. Protein Structure 13. Proteins??
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TitleThe 3rd International Workshop on Intelligent Data Analysis and Management
Author(s)Uden, Lorna;Wang, Leon S.L;Hong, Tzung-Pei;Yang, Hsin-Chang;Ting, I-Hsien
PublicationDordrecht, 1. Imprint: Springer 2. Springer Netherlands, 2013.
DescriptionX, 132 p : online resource
Abstract NoteThese papers on Intelligent Data Analysis and Management (IDAM) examine issues related to the research and applications of Artificial Intelligence techniques in data analysis and management across a variety of disciplines. The papers derive from the 2013 IDAM conference in Kaohsiung ,Taiwan. It is an interdisciplinary research field involving academic researchers in information technologies, computer science, public policy, bioinformatics, medical informatics, and social and behavior studies, etc. The techniques studied include (but are not limited to): data visualization, data pre-processing, data engineering, database mining techniques, tools and applications, evolutionary algorithms, machine learning, neural nets, fuzzy logic, statistical pattern recognition, knowledge filtering, and post-processing, etc
ISBN,Price9789400772939
Keyword(s)1. APPLICATION SOFTWARE 2. APPLIED MATHEMATICS 3. ARTIFICIAL INTELLIGENCE 4. BIOINFORMATICS 5. Computational Biology/Bioinformatics 6. Computer Appl. in Social and Behavioral Sciences 7. EBOOK 8. EBOOK - SPRINGER 9. ENGINEERING MATHEMATICS 10. Mathematical and Computational Engineering
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TitleComputational Modeling of Biological Systems : From Molecules to Pathways
Author(s)Dokholyan, Nikolay V
PublicationNew York, NY, 1. Imprint: Springer 2. Springer New York, 2012.
DescriptionVI, 366 p : online resource
Abstract NoteComputational modeling is emerging as a powerful new approach for studying and manipulating biological systems. Many diverse methods have been developed to model, visualize, and rationally alter these systems at various length scales, from atomic resolution to the level of cellular pathways. Processes taking place at larger time and length scales, such as molecular evolution, have also greatly benefited from new breeds of computational approaches. Computational Modeling of Biological Systems: From Molecules to Pathways provides an overview of established computational methods for the modeling of biologically and medically relevant systems. It is suitable for researchers and professionals working in the fields of biophysics, computational biology, systems biology, and molecular medicine
ISBN,Price9781461421467
Keyword(s)1. BIOINFORMATICS 2. Biological and Medical Physics, Biophysics 3. BIOLOGICAL PHYSICS 4. BIOMATHEMATICS 5. BIOPHYSICS 6. Computational Biology/Bioinformatics 7. EBOOK 8. EBOOK - SPRINGER 9. Mathematical and Computational Biology 10. MOLECULAR BIOLOGY 11. Molecular Medicine
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TitleLarge-Scale Quantum-Mechanical Enzymology
Author(s)Lever, Greg
PublicationCham, 1. Imprint: Springer 2. Springer International Publishing, 2015.
DescriptionXVII, 148 p. 30 illus., 12 illus. in color : online resource
Abstract NoteThis work??establishes linear-scaling density-functional theory?? (DFT) as a powerful tool for understanding enzyme catalysis,??one that can complement quantum mechanics/molecular mechanics (QM/MM)??and molecular dynamics??simulations. The thesis reviews benchmark studies demonstrating techniques capable of simulating entire enzymes at the ab initio quantum-mechanical level of accuracy. DFT has transformed the physical sciences by allowing researchers to perform parameter-free quantum-mechanical calculations to predict a broad range of physical and chemical properties of materials. In principle, similar methods could be applied to biological problems. However, even the simplest biological systems contain many thousands of atoms and are characterized by extremely complex configuration spaces associated with a vast number of degrees of freedom. The development of linear-scaling density-functional codes makes biological molecules accessible to quantum-mechanical calculation, but has yet to resolve the complexity of the phase space. Furthermore, these calculations on systems containing up to 2,000 atoms can capture contributions to the energy that are not accounted for in QM/MM methods (for which the Nobel prize in Chemistry was awarded in 2013), and the results presented here reveal profound shortcomings in said methods
ISBN,Price9783319193519
Keyword(s)1. BIOINFORMATICS 2. Biological and Medical Physics, Biophysics 3. BIOLOGICAL PHYSICS 4. BIOPHYSICS 5. Computational Biology/Bioinformatics 6. EBOOK 7. EBOOK - SPRINGER 8. Enzymology 9. PHYSICAL CHEMISTRY 10. Protein Science 11. Proteins??
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TitleMathematical Modelling of the Cell Cycle Stress Response
Author(s)Radmaneshfar, Elahe
PublicationCham, 1. Imprint: Springer 2. Springer International Publishing, 2014.
DescriptionXV, 109 p. 36 illus., 29 illus. in color : online resource
Abstract NoteThe cell cycle is a sequence of biochemical events that are controlled by complex but robust molecular machinery. This enables cells to achieve accurate self-reproduction under a broad range of conditions. Environmental changes are transmitted by molecular signaling networks, which coordinate their actions with the cell cycle. ?? This??work presents the first description of??two complementary computational models??describing the influence of osmotic stress on the entire cell cycle of S. cerevisiae. Our models condense a vast amount of experimental evidence on the interaction of the cell cycle network components with the osmotic stress pathway. Importantly, it is only by considering the entire cell cycle that we are able to make a series of novel predictions which emerge from the coupling between the molecular components of different cell cycle phases. ?? The model-based predictions are supported by experiments in S. cerevisiae and, moreover, have recently been observed in other eukaryotes. Furthermore our models reveal the mechanisms that emerge as a result of the interaction between the cell cycle and stress response networks
ISBN,Price9783319007441
Keyword(s)1. Applications of Graph Theory and Complex Networks 2. BIOINFORMATICS 3. Biological and Medical Physics, Biophysics 4. BIOLOGICAL PHYSICS 5. BIOMATHEMATICS 6. BIOPHYSICS 7. Cell cycle 8. Cell Cycle Analysis 9. Computational Biology/Bioinformatics 10. EBOOK 11. EBOOK - SPRINGER 12. PHYSICS 13. Physiological, Cellular and Medical Topics
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